There Are Not Enough Slots Available In The System To Satisfy Mpi

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2016-10-05 16:22:19 UTC
Sorry about the incomplete message...
Is there any idea about the following error? On that node, there are 15
empty cores.
$ /share/apps/siesta/openmpi-2.0.1/bin/mpirun --host compute-0-3 -np 2
/share/apps/siesta/siesta-4.0-mpi201/tpar/transiesta < A.fdf
--------------------------------------------------------------------------
There are not enough slots available in the system to satisfy the 2 slots
that were requested by the application:
/share/apps/siesta/siesta-4.0-mpi201/tpar/transiesta
Either request fewer slots for your application, or make more slots
available
for use.
--------------------------------------------------------------------------
Regards,
Mahmood

How to convert CIF (any other format) to pmdini?¶

First you can try to convert any file to pmdini by using napsys.py as,

There Are Not Enough Slots Available In The System To Satisfy Mpi List

If napsys.py can read the hoge file, it will be converted to pmdini.If not, one should convert the file to either POSCAR or dump using any converter program, and then convert it to pmdini using napsys.py.

There are not enough slots available in the system to satisfy mpi login

There are not enough slots available...¶

If you get the following error message when you run pmd with somenumber of parallel processes,

The issue is when a job spans multiple nodes, instead of paying attention to the number of MPI tasks specified by either mpirun or srun, only the many CPUs allocated on the first node are treated as the available number of MPI tasks. This causes the red herring message about There are not enough slots available in the system. Discussion: OMPI users not enough slots available. There are not enough slots available in the system to satisfy the 2 slots that were.

you may have to increase the number of slots available by the--oversubscribe option as, :

Reference:

A system call failed during shared memory initialization...¶

The following error message could appear at the end of pmd output,when the number of MPI processes and the number of automaticallydetermined spatial decomposition divisions are different.

But the pmd results are correct. You can remove it by setting anenvironment variable as, :

There Are Not Enough Slots Available In The System To Satisfy Mpi Online

Reference: